FastQCFastQC Report
Wed 8 May 2024
EGAF00007962028

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962028
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504652
Total Bases22.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16780.3325063608189406No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12690.2514604123237399No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9910.19637294610939815No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8760.17358496548116326No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8700.17239602736142925No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8660.17160340194827325No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8580.17001815112196128No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7770.15396748650555236No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7550.14960804673319436No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7220.1430688870746574No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT6950.13771866553585443No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6370.12622559704509245No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6280.12444218986549146No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5880.11651593573393151No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5570.11037308878197254No Hit
CAGGACCAGACGAACGTCCTGCAGTGGACCGTCGGCCATATCTT5320.10541917994974755No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5320.10541917994974755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)