FastQCFastQC Report
Wed 8 May 2024
EGAF00007962029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504652
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30810.6105197244834064No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19570.38779198338657134No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18230.36123903204584545No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15940.3158612271426647No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14850.2942621846341637No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11320.22431299192314705No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9070.17972781243312222No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8630.17100893288840627No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7880.15614720639173132No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7840.15535458097857532No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG7480.14822095226017135No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7000.1387094473022994No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6990.1385112909490104No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6820.13514263294309742No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6590.13058503681745046No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6480.12840531693127144No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6190.12265878268589048No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6000.11889381197339949No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5970.1182993429135325No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5940.1177048738536655No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5670.11235465231486251No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5440.10779705618921553No Hit
GTTGGTAACATCGGTCCGGAAGCGGGCGCAA5260.10423024183001356No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5120.10145605288396757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)