FastQCFastQC Report
Wed 8 May 2024
EGAF00007962030

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962030
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466527
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14580.3125221048299455No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12040.2580772388307644No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8240.17662428969813107No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8180.17533819050130003No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8150.17469514090288452No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7710.16526374679279013No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7180.15390320388744919No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6990.14983055643081752No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6890.14768705776943242No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6680.14318571058052373No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6320.13546911539953743No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT6240.13375431647042937No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5590.1198215751714263No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5420.11617762744707165No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5350.11467717838410209No Hit
CAGGACCAGACGAACGTCCTGCAGTGGACCGTCGGCCATATCTT4750.10181618641579158No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4680.10031573735282202No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)