FastQCFastQC Report
Wed 8 May 2024
EGAF00007962031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466527
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68391.4659387345212602No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17300.3708252684196199No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15700.3365292898374585No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14730.31573735282202314No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12740.27308172946045994No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9430.2021319237686136No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8660.18562698407594844No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7260.15561800281655724No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7180.15390320388744919No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7100.1521884049583411No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7020.15047360602923304No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6520.13975611272230762No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG6430.13782696392706104No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5880.12603772128944307No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5770.12367987276191945No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5750.12325117302964245No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5650.12110767436825735No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5540.11874982584073376No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5540.11874982584073376No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5370.11510587811637911No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5040.10803233253380833No Hit
GTTGGTAACATCGGTCCGGAAGCGGGCGCAA4780.1024592360142071No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)