FastQCFastQC Report
Wed 8 May 2024
EGAF00007962032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507049
Total Bases22.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16560.32659565446337535No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13710.27038806900319295No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9090.1792726146782658No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8940.17631432070667727No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8580.16921441517486474No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8320.16408670562411126No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8070.1591562156714637No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7980.15738123928851058No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7470.14732303978510952No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7330.14456196541162689No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT6950.13706762068360256No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6470.12760107997451922No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5790.11419014730331782No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5780.11399292770521191No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5730.1130068297146824No Hit
CAGGACCAGACGAACGTCCTGCAGTGGACCGTCGGCCATATCTT5500.10847077895824664No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5410.10669580257529351No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5280.10413194779991677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)