FastQCFastQC Report
Wed 8 May 2024
EGAF00007962033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507049
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31870.6285388591635128No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19390.3824088007273459No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18140.357756350964108No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16820.33172336401412883No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14900.29385720117779546No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10370.2045167232358214No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9070.178878175482054No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8070.1591562156714637No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7990.15757845888661648No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7690.15166187094343941No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7270.14337864782299148No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG7170.14140645184193246No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7020.1384481578703439No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6730.1327287895252727No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6500.12819273876883694No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6410.12641776238588381No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6140.12109283323702444No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5980.11793731966732998No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5930.11695122167680047No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5800.11438736690142373No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5470.10787912016392892No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5450.10748468096771711No Hit
GTTGGTAACATCGGTCCGGAAGCGGGCGCAA5420.10689302217339941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)