FastQCFastQC Report
Wed 8 May 2024
EGAF00007962035

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962035
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474627
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68811.4497700299392997No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18020.3796665592138669No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15970.33647474753859347No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15640.32952191931769576No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13220.27853451236444615No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9900.20858484662693022No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8740.18414460197165353No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7780.1639181926017694No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7540.15886159025929836No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG6680.14074209853211048No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6670.14053140676784087No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6660.1403207150035712No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6420.1352641126611002No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6400.13484272913256093No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5900.12430814091907962No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5570.11735531269818195No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5560.11714462093391231No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5420.11419493623413754No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5360.11293078564851979No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5180.10913833389166652No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5090.10724210801323986No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5050.10639934095616137No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)