FastQCFastQC Report
Wed 8 May 2024
EGAF00007962052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500711
Total Bases22 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT32390.6468801364459739No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC29580.5907599393662213No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC26530.5298465581942479No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG23590.47113005306454225No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT17820.355893918847399No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC16700.33352572641703493No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG16560.3307297023632395No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13130.26222711304524965No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC12720.25403875688770566No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12410.24784756076858708No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11250.2246805043228529No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8190.1635674071470369No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6870.1372048946398222No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6820.1362063146206095No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6780.13540745060523937No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT6580.13141313052838863No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC6550.13081398251686102No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT6410.12801795846306552No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5830.11643443024019844No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5640.11263982616719025No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5560.11104209813644997No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5220.10425175400580375No Hit
ATTGGCTGCTTGGGTAGCCAGTTCGTTCATGCGCTGCAGAATGC5220.10425175400580375No Hit
ACGATCGGTGTCTTTGGAGTTAGTACCGTTCGCTGCCTGAACTG5200.10385232199811867No Hit
CACGCAGGCACCACGACGGCGACGAGACGGCGGCGGAGTAGGTT5200.10385232199811867No Hit
AGTAGAGGCACGGTCCAGACCCTTGATTTGTTTGCGCATTTTTT5140.10265402597506347No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5080.10145572995200824No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5050.10085658194048062No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)