FastQCFastQC Report
Wed 8 May 2024
EGAF00007962053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500711
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA69811.3942174228247433No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA36710.7331574501059493No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA34880.6966094214027653No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30200.6031423316044585No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28860.5763803870895586No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG24900.4972928495679144No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC17610.3516998827667058No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC13050.2606293850145094No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12620.2520415968492803No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9770.19512253575415758No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8090.16157024710861156No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7180.14339609075894078No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6940.13860290666671993No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6760.13500801859755426No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6760.13500801859755426No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA6710.1340094385783416No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6150.12282534236315959No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA5910.11803215827093873No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5770.11523613421714322No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5730.11443727020177309No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5610.11204067815566265No Hit
GGCCTGACCATTAGCGAGAAGATGCGTAAAC5480.10944437010570968No Hit
GACAAAGCGGAAGCTCAGAGCACCCCGGAAC5410.10804635807881192No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5390.10764692607112686No Hit
ATCAACCGTGCAGCGGACGATGCGGCTGGTC5360.10704777805959925No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA5330.10644863004807163No Hit
GGTCTGACCATTAGCGAAAAAATGCGCAAAC5200.10385232199811867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)