FastQCFastQC Report
Wed 8 May 2024
EGAF00007962054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466371
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT31340.6719971867890585No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC28920.6201071678985186No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC24690.5294068456229053No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG20890.4479266506708179No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT16090.34500429915239156No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG16040.3439321913240746No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC14580.3126266427372199No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12160.26073662384668No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC11150.2390800457146778No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11130.238651202583351No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10720.2298599183911521No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7200.15438352727763946No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6620.14194707646916296No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6560.14066054707518263No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6260.134227900105281No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT6070.13015389035767663No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT5910.12672314530706238No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC5550.11900396894318044No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5100.10935499848832796No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5030.10785404752868424No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5010.10742520439735748No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4930.10570983187205035No Hit
ACGATCGGTGTCTTTGGAGTTAGTACCGTTCGCTGCCTGAACTG4860.10420888091240664No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4800.10292235151842632No Hit
AGTAGAGGCACGGTCCAGACCCTTGATTTGTTTGCGCATTTTTT4720.1012069789931192No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4710.10099255742745583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)