FastQCFastQC Report
Wed 31 May 2023
EGAF00007962055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466371
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA66941.4353379605507204No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65211.3982430296909543No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA32890.7052325294668838No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA31950.6850769022945252No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26710.5727200018869099No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG21320.45714677799434356No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC15610.3347120640005489No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC11170.23950888884600458No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11020.23629256536105378No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8810.18890539934944495No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7030.1507383606613619No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6590.1413038117721728No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6450.13830190985288535No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA6310.13530000793359792No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6160.13208368444864713No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5610.12029049833716075No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5520.11836070424619026No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5340.11450111606424929No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5330.11428669449858589No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA5270.11300016510460556No Hit
GGCCTGACCATTAGCGAGAAGATGCGTAAAC5240.1123569004076154No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5110.10956942005399135No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA4980.1067819397003673No Hit
GACAAAGCGGAAGCTCAGAGCACCCCGGAAC4910.10528098874072359No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4900.1050665671750602No Hit
GACAAAGCGGAGGCCCAGTCTACCCCGGAAC4740.10163582212444598No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4700.10077813586179243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)