FastQCFastQC Report
Wed 8 May 2024
EGAF00007962056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504414
Total Bases22.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT32040.6351925204296471No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC30670.6080322909356203No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC26380.5229831051477557No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG23010.4561729055894563No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT17300.34297224105595797No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG17060.3382142446482453No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC16070.3185875094664304No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13330.2642670504783769No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC12610.24999306125523874No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12310.24404556574559788No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11360.22521182996506836No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8090.16038412890998266No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6950.1377836459733473No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6880.13639589702109775No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC6770.13421514866756276No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6760.1340168988172414No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT6310.12509565555278004No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT6190.1227166573489237No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5830.11557966273735464No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5790.11478666333606918No Hit
ATCACGGTCAGACTGCGCGTTGGTACCGTTTGCGGACTGAACTG5630.11161466573092738No Hit
ATTGGCTGCTTGGGTAGCCAGTTCGTTCATGCGCTGCAGAATGC5370.10646016962257193No Hit
CACGCAGGCACCACGACGGCGACGAGACGGCGGCGGAGTAGGTT5330.10566717022128648No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5280.10467592096967966No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5260.10427942126903693No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5200.10308992216710876No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5180.10269342246646604No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)