FastQCFastQC Report
Wed 8 May 2024
EGAF00007962057

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962057
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504414
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA69781.383387455542471No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA36650.7265857014277954No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA34130.6766267391468119No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32240.6391575174360744No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29700.5888020554544482No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG23810.4720328936151653No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC17030.33761949509728123No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC12600.2497948114049174No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12210.24206306724238424No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9260.18357936139758213No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8020.15899637995773314No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG7190.14254164238105999No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7010.13897314507527547No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6730.1334221492662773No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6480.12846590300824323No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA6350.1258886549540655No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6320.12529390540310142No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA6110.1211306585463528No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5960.11815691079153236No Hit
GGTCTGACCATTAGCGAAAAAATGCGCAAAC5840.115777912587676No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5790.11478666333606918No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5730.113597164234141No Hit
GACAAAGCGGAAGCTCAGAGCACCCCGGAAC5570.1104251666289992No Hit
GGCCTGACCATTAGCGAGAAGATGCGTAAAC5540.1098304170780351No Hit
ATCAACCGTGCAGCGGACGATGCGGCTGGTC5510.109235667527071No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5500.10903741767674965No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5110.1013056735142165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)