FastQCFastQC Report
Wed 8 May 2024
EGAF00007962058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472075
Total Bases20.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT31130.6594291161362071No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC30110.6378223799184451No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC24380.5164433617539586No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG21450.4543769528147011No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT16210.34337764126462955No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG16190.3429539797701636No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC15330.32473653550812903No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC12490.26457660329396815No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11980.25377323518508715No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11600.2457236667902346No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10660.22581157655033626No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7990.16925276703913572No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6680.14150293915161785No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6660.14107927765715195No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC6610.14002012392098714No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6490.1374781549541916No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT5950.1260392946036117No Hit
ACGATCGGTGTCTTTGGAGTTAGTACCGTTCGCTGCCTGAACTG5270.11163480379177038No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5200.11015198856113965No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5180.10972832706667372No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT5170.10951649631944077No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5170.10951649631944077No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5080.10761001959434412No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4980.10549171212201451No Hit
CACGCAGGCACCACGACGGCGACGAGACGGCGGCGGAGTAGGTT4970.10527988137478154No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4930.10443255838584972No Hit
AGTAGAGGCACGGTCCAGACCCTTGATTTGTTTGCGCATTTTTT4880.1033734046496849No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)