FastQCFastQC Report
Wed 8 May 2024
EGAF00007962059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472075
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68171.4440502038870942No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA66841.4158767145051103No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA34210.724672986283959No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA31640.6702324842450882No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27740.5876184928242334No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG22170.4696287666154742No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC15930.33744638034210667No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC12380.2622464650744056No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11190.2370386061536832No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8840.1872583805539374No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7870.16671079807234018No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6730.14256209288778268No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6640.14065561616268601No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6540.1385373086903564No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6080.12879309431764022No Hit
GGCCTGACCATTAGCGAGAAGATGCGTAAAC5720.12116718741725362No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5600.11862521845045809No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA5530.11714240321982737No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5350.11332944976963408No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5350.11332944976963408No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA5260.11142297304453741No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5080.10761001959434412No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5080.10761001959434412No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA5040.10676269660541227No Hit
GACAAAGCGGAAGCTCAGAGCACCCCGGAAC5040.10676269660541227No Hit
GACAAAGCGGAGGCCCAGTCTACCCCGGAAC4930.10443255838584972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)