FastQCFastQC Report
Wed 8 May 2024
EGAF00007962060

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962060
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485157
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7420.15294018225028186No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6510.134183367446002No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5650.11645714686173755No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5230.10780015541360836No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT4970.10244106546952843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)