FastQCFastQC Report
Wed 8 May 2024
EGAF00007962061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485157
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31330.6457703382616349No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13610.2805277466881855No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6640.136862912418042No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5890.12140399911781134No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5640.11625102801773447No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5280.10883074963362374No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5280.10883074963362374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)