FastQCFastQC Report
Wed 8 May 2024
EGAF00007962062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449182
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6590.1467111326811849No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6560.1460432519557774No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5160.11487548477009318No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5020.11175870805152477No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT4920.10953243896683305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)