FastQCFastQC Report
Wed 8 May 2024
EGAF00007962063

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962063
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449182
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64011.4250348411111753No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12680.2822909199389112No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6520.1451527443219007No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5890.1311272490883428No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5170.11509811167856236No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5080.1130944695023398No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4950.11020031969224055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)