FastQCFastQC Report
Wed 8 May 2024
EGAF00007962065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487346
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32540.6676981036060623No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14230.29198967468697806No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6980.14322473150492668No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6350.1302975709249691No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6010.12332100807229361No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6000.1231158150472149No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5760.11819118244532631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)