FastQCFastQC Report
Wed 8 May 2024
EGAF00007962066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457047
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6430.14068575004321218No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6400.1400293624069297No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5340.11683699925828198No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4980.10896034762289217No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT4970.10874155174413136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)