FastQCFastQC Report
Wed 8 May 2024
EGAF00007962067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457047
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68271.4937194643001706No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12740.27874594954129445No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6330.1384977912556039No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5860.12821438495384502No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5470.11968134568217273No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5240.11464904047067369No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4590.10042730835121988No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)