FastQCFastQC Report
Wed 8 May 2024
EGAF00007962083

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962083
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473072
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA66311.401689383434234No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64071.3543392971894341No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33460.7072919132816993No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA32350.6838282544728921No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA28610.6047705211891635No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA24390.515566340852978No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG20330.4297443095342781No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18390.38873575269726385No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13660.28875097236784253No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11800.24943349003957116No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11720.2477424155308283No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11150.23569350965603544No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10410.22005107045016403No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9140.1932052626238712No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8900.18813203909764264No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8460.17883112929955694No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA7780.16445699597524266No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7620.16107484695775695No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7590.16044069401697839No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7450.1574813136266784No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7410.15663577637230697No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG7190.15198532147326413No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6980.14754625088781412No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6700.14162749010721412No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6260.13232658030912842No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6130.12957858423242127No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5970.12619643521493557No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5820.12302567051104271No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5730.12112321168870702No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5660.119643521493557No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5370.11351337639936415No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4970.1050580038556499No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4960.10484661954205703No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4890.10336692934690703No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4790.10125308621097846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)