FastQCFastQC Report
Wed 8 May 2024
EGAF00007962085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462588
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28390.6137210649649364No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16470.35604036421178237No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8500.18374882184578933No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8160.17639886897195778No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5720.12365214834799No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5300.11457279479796276No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4800.10376404057173988No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)