FastQCFastQC Report
Wed 8 May 2024
EGAF00007962087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426657
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60011.4065162413835939No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14630.34289839379173437No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7570.1774258948054292No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7330.17180076736113553No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4780.1120337882655154No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4490.10523675927032722No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4360.10218981523800148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)