FastQCFastQC Report
Wed 8 May 2024
EGAF00007962088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464315
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7720.16626643550176065No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7500.16152827283202137No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6470.13934505669642375No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6370.13719134639199682No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5260.11328516201285765No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4660.10036290018629594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)