FastQCFastQC Report
Wed 8 May 2024
EGAF00007962089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464315
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29730.6402980735061327No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16110.3469627300431819No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8140.17531201878035385No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7920.17057385611061454No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5470.11780795365215425No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5290.11393127510418574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)