FastQCFastQC Report
Wed 8 May 2024
EGAF00007962091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433100
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64531.4899561302239668No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16350.3775109674440083No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7790.17986608173631957No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7100.16393442622950818No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4900.11313784345416762No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4800.11082890787347034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)