FastQCFastQC Report
Wed 8 May 2024
EGAF00007962093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479088
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28430.5934191630765121No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14220.29681394649834686No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13680.28554253080853625No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13330.27823698360217747No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11290.23565607988511503No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8860.18493470928096717No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8290.1730371038306115No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7790.16260060782152758No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7100.14819824332899176No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6410.13379587883645594No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5440.11354907657883312No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5080.10603479945229267No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4980.1039475002504759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)