FastQCFastQC Report
Wed 8 May 2024
EGAF00007962095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446038
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62691.4054856312690847No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13110.293921145731978No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12830.2876436536797313No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12040.26993215824660677No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10750.2410108555773275No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8320.18653119240961533No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6840.1533501629905972No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6810.15267757455642794No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6610.14819365166196602No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6540.14662427864890437No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4860.10895932633542434No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4740.10626897259874718No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)