FastQCFastQC Report
Wed 8 May 2024
EGAF00007962097

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962097
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484201
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31870.6581977319336392No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14190.2930601134652758No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13770.28438602976862914No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12810.2645595527477225No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11740.24246129190150373No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9980.20611275069650825No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7550.1559269807373384No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7490.15468782592353175No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7050.1456006906222829No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6820.14085059716935736No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5470.11296961385870745No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4970.10264332374365193No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4900.10119764312754413No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)