FastQCFastQC Report
Wed 8 May 2024
EGAF00007962099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453471
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66151.4587481889690852No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13030.2873392124303428No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12770.2816056594578264No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12220.26947698970827244No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10580.23331150172778412No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8350.18413525892504704No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7420.16362678098489208No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6950.15326228138072776No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6430.14179517543569492No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6000.1323127609042254No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5470.12062513369101883No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4580.10099874082355872No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4570.10077821955538503No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4540.1001166557508639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)