FastQCFastQC Report
Wed 8 May 2024
EGAF00007962101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472007
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30220.6402447421330616No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21630.45825591569616553No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12140.25719957543002536No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7550.15995525490088072No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7260.15381127822256874No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6740.14279449245456105No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6200.1313539841570146No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5750.1218202272423926No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5110.10826110629715237No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4910.1040238810017648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)