FastQCFastQC Report
Wed 8 May 2024
EGAF00007962103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439378
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62521.4229205831880523No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19690.4481334978082653No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11090.25240225955782947No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6530.14861918439248212No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6430.14634323976166308No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6070.1381498390907146No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5820.13245997751366703No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5710.12995643841976615No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4800.10924534227931303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)