FastQCFastQC Report
Wed 8 May 2024
EGAF00007962105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475689
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32280.6785946280027497No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21230.4462999985284503No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12470.2621460660221279No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7540.15850692364128666No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6980.14673452612946694No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6590.1385358921480211No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6580.13832567076388144No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6470.13601323553834543No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5190.10910489836847184No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4920.10342892099670163No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)