FastQCFastQC Report
Wed 8 May 2024
EGAF00007962107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445937
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65771.474872011068828No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20210.4532030309214082No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12120.27178727039918193No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6860.15383338902131916No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6520.14620899364708467No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6120.13723911673622058No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5890.13208143751247373No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5560.12468128906101086No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5060.11346894292243075No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4710.10562030062542466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)