FastQCFastQC Report
Wed 8 May 2024
EGAF00007962109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484687
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31980.6598072570545528No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31980.6598072570545528No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG10010.2065250357447177No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9620.19847860578063783No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7920.16340442388593052No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7880.16257914901781975No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA6350.13101238531258316No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6190.12771128584014013No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5460.11265001949711875No Hit
GGCCTGACCATTAGCGAGAAGATGCGTAAAC5140.10604782055223266No Hit
GGTCTGACCATTAGCGAAAAAATGCGCAAAC4970.10254040236276196No Hit
ATCAACCGTGCAGCGGACGATGCGGCTGGTC4870.10047721519248504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)