FastQCFastQC Report
Wed 8 May 2024
EGAF00007962111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447747
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66771.491243939099536No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28680.6405403051276726No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG9040.20189973355488702No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8480.1893926704143188No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7520.1679519907447733No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7060.15767833173644938No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA5420.12105050396764244No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5230.11680703611637823No Hit
ATCAACCGTGCAGCGGACGATGCGGCTGGTC4780.10675671752127876No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4660.10407663256258558No Hit
GGTCTGACCATTAGCGAAAAAATGCGCAAAC4550.1016198880171168No Hit
GGCCTGACCATTAGCGAGAAGATGCGTAAAC4540.10139654760389237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)