FastQCFastQC Report
Wed 8 May 2024
EGAF00007962112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489002
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14440.29529531576557966No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12230.2501012265798504No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC9570.1957047210440857No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8570.17525490693289597No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6900.1411037173672091No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6020.12310788094936218No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4960.10143107799150107No Hit
ATCGCTGCTGTTGTTGGTAGAGTTCGCGGCCTGAACGGACAGTT4900.10020408914482967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)