FastQCFastQC Report
Wed 8 May 2024
EGAF00007962113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489002
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33250.6799563191970585No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31060.6351712262935529No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG9820.20081717457188314No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9390.19202375450407155No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8120.1660524905828606No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7870.16094003705506316No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6400.13087881031161427No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA6140.12556185864270492No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5590.11431446088155059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)