FastQCFastQC Report
Wed 8 May 2024
EGAF00007962124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478985
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15040.3139973068050148No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14940.3119095587544495No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG14310.29875674603588837No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13840.2889443301982317No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13810.2883180057830621No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13050.27245112059876614No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12450.2599246322953746No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11450.23904715178972202No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC11140.2325751328329697No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG10610.22151006816497387No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9950.20773093103124313No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8620.1799638819587252No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC8510.17766735910310344No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG7690.16054782508846832No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7000.14614236353956805No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT6930.14468093990417236No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT6850.14301074146372017No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6760.1411317682182114No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6390.13340710043111997No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5840.12192448615301105No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5820.12150693654289801No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5760.12025428771255886No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5710.11921041368727622No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5480.11440859317097613No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5430.11336471914569349No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5390.1125296199254674No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5360.1119032955102978No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5020.10480495213837594No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4990.10417862772320635No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4940.10313475369792373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)