FastQCFastQC Report
Wed 8 May 2024
EGAF00007962125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478985
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA31930.6666179525454868No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31780.6634863304696389No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29230.6102487551802248No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16040.33487478731066733No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA14720.30731651304320595No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14090.29416370032464484No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13660.2851863837072142No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12930.26994582293808783No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12510.26117728112571376No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG11740.24510162113636128No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC10990.22944351075712185No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9600.20042381285426478No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG8780.18330427883962963No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8240.17203043936657725No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8080.16869004248567282No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA7890.16472332118959881No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7640.1595039510631857No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG7550.15762497781767695No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7430.15511968015699865No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7070.14760378717496372No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6340.13236322640583734No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6180.12902282952493294No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6080.12693508147436766No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5750.12004551290750233No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5660.11816653966199359No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5560.11607879161142834No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5490.11461736797603264No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5310.11085942148501518No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5110.10668392538388466No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5050.1054312765535455No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4970.10376107811309332No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4880.10188210486758457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)