FastQCFastQC Report
Wed 8 May 2024
EGAF00007962126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446041
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14530.3257548072934999No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13860.3107337666268348No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13220.2963853098706173No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG13030.29212561177111523No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12430.2786739335621613No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11980.2685851749054459No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11810.26477386607957565No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10600.23764631502485198No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC10290.23069628128355915No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG9750.21858977089550063No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8650.19392836084575185No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8630.19347997157212005No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC7550.16926695079600304No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7100.15917819213928766No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6960.15603946722386508No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG6850.1535733262188902No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT6710.1504346013034676No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT6600.14796846029849273No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6110.13698292309451374No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5820.1304812786268527No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5760.1291361108059573No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5590.12532480198008702No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5280.1183747682387942No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5220.1170296004178988No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4790.10738923103481518No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4760.1067166471243675No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4710.10559567394028802No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4700.10537147930347211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)