FastQCFastQC Report
Wed 8 May 2024
EGAF00007962127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446041
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65291.4637667837709987No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28810.6459047486666024No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26540.5950125661093936No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15220.3412242372337969No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13400.30042081333330345No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA13150.294815947412906No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12630.2831578262984793No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11700.26230772507460076No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11460.2569270537910192No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG10850.24325118094524942No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC9820.2201591333532119No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8960.20087839458704468No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8670.19437675011938366No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG7730.17330245425868923No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7560.16949114543281896No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG7150.16029916532336713No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7140.16007497068655124No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA7020.15738463504476047No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6960.15603946722386508No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6560.14707168175122914No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6060.13586194991043424No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5700.1277909429850619No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5400.12106510388058497No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5130.11501184868655573No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5120.11478765404973983No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4910.11007956667660596No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4840.10851020421889467No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4540.10178436511441773No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4500.10088758656715414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)