FastQCFastQC Report
Wed 8 May 2024
EGAF00007962129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485004
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33810.6971076527203899No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31210.6434998474239388No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29760.613603186777841No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15280.315048948049913No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA14430.29752331939530396No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14090.2905130679334603No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12980.2676266587492062No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12700.26185351048651145No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG12000.2474206398297746No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11730.24185367543360464No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC10470.21587450825147833No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9490.19566848933204672No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8500.17525628654609035No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG8460.17443155107999112No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG8270.17051405761601965No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8270.17051405761601965No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT8110.16721511575162265No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7980.16453472548680012No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7670.15814302562453092No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA7320.1509265902961625No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6860.14144213243602116No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6600.13608135190637602No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6370.13133912297630534No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6150.12680307791275947No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5720.11793717165219256No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5530.11401967818822113No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5500.1134011265886467No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5430.111957839522973No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5350.1103083685907745No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5190.1070094267263775No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4880.10061772686410833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)