FastQCFastQC Report
Wed 8 May 2024
EGAF00007962131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454959
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68681.5095865781312163No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28450.6253310737890667No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27690.6086262718179001No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14640.32178723797089404No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13420.2949716348066529No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13390.2943122347288437No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA13000.285740033717324No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11480.2523304297749907No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11340.24925322941188108No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG11050.24287902865972538No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC9960.21892082583265743No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8800.1934240228240347No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG8340.18331322163096014No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8080.17759842095661368No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7680.16880641991915754No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA7290.16023421890763784No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG7270.159794618855765No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7200.1582560186742102No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6840.1503432177404997No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6730.14792541745519927No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6340.13935321644367954No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5650.12418701465406773No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5510.1211098142909581No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5380.11825241395378484No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5280.11605441369442082No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5230.11495541356473879No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5030.11055941304601075No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4980.10946041291632871No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4930.10836141278664671No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4740.10418521229385504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)