FastQCFastQC Report
Wed 8 May 2024
EGAF00007962133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476045
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31600.6638027917528805No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14240.2991313846380069No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12080.25375752292325304No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10940.2298102070182441No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9210.1934691048115199No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7210.15145626989045152No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5750.1207869003980716No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5500.11553529603293806No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5250.11028369166780451No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5160.10839311409635644No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4960.1041918306042496No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)