FastQCFastQC Report
Wed 8 May 2024
EGAF00007962137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480788
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34770.7231877667495861No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14110.29347654267577394No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12660.26331772007620824No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10900.22671114919673535No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9980.2075758962370109No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7100.14767423479787348No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5890.12250721731823588No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5640.11730742031831078No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5620.11689143655831676No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5210.10836376947843955No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5020.10441192375849648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)