FastQCFastQC Report
Wed 8 May 2024
EGAF00007962139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448450
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70291.5673988181514105No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12470.27806890400267587No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11360.25331698071133907No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10480.23369383431820714No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8870.19779239603077264No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6820.15207938454677222No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5510.12286765525699632No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5420.12086074255769876No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5180.11550897535957186No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4690.10458245066339615No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4650.10369048946370833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)