FastQCFastQC Report
Wed 8 May 2024
EGAF00007962140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461135
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20150.43696531384518633No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17880.3877389484641157No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13200.2862502304097499No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7290.15808819543083913No Hit
ACGGGCGATACGTACAGTGTAACCCTGTTCCACGTAAGAATCTT7060.1531005020221844No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6620.14355882767519274No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6460.14008912791265032No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6370.1381374217962202No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5620.12187320415930258No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5510.11948778557255468No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5480.11883721686707796No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5440.11796979192644236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)